Science - Biology - Bioinformatics

Science - Biology - Bioinformatics

Visualisation for Bioinformatics - DNA microarray Visualisation Resources, Papers, Articles, Posters and Talks.
The Swiss Institute of Bioinformatics Homepage (SIB) - SIB operates the ExPASy proteomics server and the Swiss node of EMBnet. Teaching activities include a series of post-graduate courses given at the Universities of Geneva and Lausanne, as well as at the EPFL, and a Masters Degree in bioinformatics. Major research areas include the development of integrated databases and software resources in the field of proteomics.
The Ensembl Project - Ensembl is a joint project between EMBL-EBI and the Sanger Centre to develop a software system which produces and maintains automatic annotation on eukaryotic genomes.
The Open Lab - A community focused on the freedom of information as it pertains to the biosciences.
The International Society for Computational Biology - The International Society for Computational Biology is dedicated to advancing the scientific understanding of living systems through computation; the emphasis is on the role of computing and informatics in advancing molecular biology.
The Bioinformatics Resource - The site of CCP11 (Collaborative Computational Project 11) the goal of which is to "to foster the broad bioinformatics community and the UK research community in particular". Comprehensive list of links, including information on courses, conferences and workshops that they run.
European Molecular Biology Network - EMBnet is the only organisation world-wide bringing bioinformatics professionals to work together to serve the expanding fields of genetics and molecular biology.
Bioinformatics and Biological Computing - Comprehensive bioinformatics site, with access to multiple database searching and sequence analysis tools - from the Weizmann Institute of Science.
Biodatabase Mining - Whitepaper on database mining in the Human Genome Initiative.
Society for Bioinformatics in the Nordic countries - SocBiN is a non-profit organisation for people working with and interested in bioinformatics. One task of the society is to arrange annual conferences on Bioinformatics, of which the first took place April 1999 in Lund.
Genops Bioinformatics - Ngene - Ngene - modular sequence analysis software suite for Windows and Mac.
DNA Structural Atlas - Easy-to-use summary of genomic information currently available for all organisms-from the Technical Univ. of Denmark.
USGS Center for Biological Informatics - Facilitates access to and application of biological information.
Iranian Bioinformatics Research Center - Research on Bioinformatics topics include: Genomics, Drug discovery, intelligent agent applications, sequencing, pattern matching, complex algorithms, distributed Databases, pharmaceogenomics, ...
Biology Guided Inquiry Learning Environment (BGuILE) - Inquiry-based learning environment for high school biology, using computers to support student investigations.
Chickscope 1.5 - Students raise chicken embryos in the classroom and obtain magnetic resonance images through the Internet.
Bioinformatics and Computational Biology Graduate Program - Bioinformatics and Computational Biology faculty, research, education, and resources at Iowa State University.
DNA Electrophoresis simulation - Brief description of a module written by Mark Bergland and Karen Klyczek at the University of Wisconsin-River Falls that appears on the BioQUEST Library (volume V); allows you to import any genbank sequence record and use a variety of restriction enzymes to cut it up.
C.elegans Network - Provides comprehensive and easy navigation to C. elegans/mammalian Bioinformatics, aging, oxidative stress (Channel 1); 1-2 new recent abstracts featured/week (Channel 2); Technology highlights (Channel 3).
University of Wisconsin Biologists on the Web - The site includes instructional resources for teaching and learning biology using technology at the University of Wisconsin.
Molecular Biology and Molecular Biology Databases - Links to bioinformatics general information and tutorial sites - from the Weizmann Inst. of Science; Genome and Bioinformatics Unit.
Biocomputing for Schools - Offers material for a multimedia project in biology and computer science education, highlighting the possibilities of the new Information Technologies in the field of Biocomputing. The target group are pupils aged 16-19 years and their teachers.
Canadian Bioinformatics Workshops - Workshops involve hands-on instruction in the use and development of software tools for genomic and computational biology research.
Bioinformatics - Very good basic explanation of Bioinformatics - from the BioTech Resources Web Project at Indiana Univ and the Univ. of Texas.
Bioinformatics Centre - University of Pune, India - The centre information in the area of Biotechnology with a stress on Virology, proteins & nucleic acid sequences and structures, Microbial strain data. The Centre also offers unique facilities for data analysis. The centre has developed and it gives links to Data banks, Microbial Strain Data Network, APBioNet, Alpha Server, Medline Workbench Pune-Net, Bioinformatics Useful Sites, Biotech Directory of India, runs an Advanced Diploma in Bioinformatics and a Protein Data Bank (PDB)Mirror Site
Bioinformatics Information - This web site is maintained by Dr. Seyeon Weon, Korea to provide bioinformatics related information. The site gives information on Bioinformatics Courses, Database Archive, Software Archive, Sources in the Internet and What is Bioinformatics?
University of Colorado Bioinformatics Homepage - This is a bioinformatics site created by undergrads primarily for undergrads. It has instructions and links for bioinformatic tools and resources.
Bioservers - This site contains user-friendly tools to launch DNA database searches, statistical analyses, and population modeling from a centralized workspace. From DNA Learning Center at Cold Spring Harbor Laboratory.
Computational Molecular Biology Training Group - Research based interdisciplinary training of graduate students in computational molecular biology with emphasis on bioinformatics, genomics, genome evolution, and macromolecular structure-function studies at Iowa State University.
MBB452a: Genomics and Bioinformatics (Yale University) - Bioinformatics course at Yale University. All course slides are available online.
GPCR Website - Report of a project on G protein coupled (seven-transmembrane segment/7TM) receptors done at CMBI.
HealthLink MCW - Offers an article on how the Human Genome Project could revolutionize medicine.
Biology Student WorkBench - A computational environment that permits anyone with a web browser to use bioinformatics for research, teaching, or learning; investigations in diverse areas of biology.
Institute of Bioinformatics - The Institute of Bioinformatics is a not-for-profit organization engaged in research in Bioinformatics in Bangalore, India.
Canadian Bioinformatics Workshops - short interdisciplinary computer laboratory-based courses in use, interpretation and development of software tools for genomics, proteomics and computational biology research
Bioinformatics and Computational Biology at ISU - An Interdisciplinary Graduate Program offering Ph.D. and M.S. degrees in Bioinformatics and Computational Biology (BCB) at Iowa State University
University of Colorado Bioinformatics Site - A bioinformatics group created by students, for students. Helps to educate other undergrads about bioinformatics and the tools available online.
Biocomputing Hypertext Coursebook - An online bioinformatics textbook with exercises. Covers sequence alignment, phylogenetics, and protein-folding.
Index of Computational Molecular Biology and Bioinformatics Courses - Listing of computational molecular biology course pages that have extensive online course materials.
Computational Biology at Stony Brook - The home page of the computational Biology course at Stony Brook.
Bioinformatics Institute of India - Distance Learning Department - Offers a one year post-graduate diploma in bioinformatics. Includes an overview of the curriculum and registration information.
Bioinformatics Institute of India - Bioinformatics Institute of India is an Institute providing Regular as well as Distance learning programs in Bioinformatics for Graduates and under graduates
AG BIODV Software - Links to software developed by the AG BIODV group. Tools for consensus, alignment and definition. Both downloads and executables.
www.COMPBIO.net - Source code and research papers in computational biology. Includes downloadable Visualize molecule visualisation software which supports PDB and DAS files.
XDigitize - A visualization software system for evaluation of hybridisation experiments.
Premier Biosoft International - Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, drawing restriction plasmid maps, gateway cloning experiments, protein interaction network and functional genomics.
Meta-MEME v2.0.1 - Software toolkit for building and using motif-based hidden Markov models of DNA and proteins - from the Univ. of California-San Diego.
Linux Software Encyclopedia - Bioinformatics - Links to Bioinformatics software for Linux. From the Linux Software Encyclopedia.
Molecular Evolutionary Genetics Analysis (MEGA2) software - Provides free downloadable MEGA2 software for use in comparative sequence analysis of genetic data. Program for Win32 platforms.
Computer Program for Polyphasic Taxonomy Analysis - The proBiosys suite of programs compares phenetic, chemotaxonomic and nucleic acid sequence data. Algorithms for polyphasic taxonomy are available to construct Dendrograms, the suite is simple to use.
HMMER - profile hidden Markov models for sequence analysis - Sean Eddy's tools to build HMMs from multiple alignments, align sequences to HMMs, calculate e-scores, and other tools
The Sanger Centre: Software - Production software used at the Sanger Centre, physical mapping software, informatics and analysis software, and data formats
PubCrawler - An Update Alerting Service for PubMed and GenBank - Software and an online service for periodically performing predefined searches at NCBI, reporting new results by email or on the web.
Phred/Phrap/Consed System Home Page - basecaller / assembler / sequencer finisher and related tools from the UW Genome Center.
Artemis: A DNA Sequence Viewer and Annotation Tool - Java program to display a DNA sequence, annotated with features, ORFs. Reads many input formats.
NCBI BLAST - BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.
WU-BLAST Archives - WU-BLAST: The Washington University BLAST. "...faster at any sensitivity, more sensitive at any speed, the first BLAST with gapped alignments and statistics."
The FASTA package of sequence comparison programs - William Pearson's package for fast sequence comparison
AnnHyb - nucleotidic sequence manager - Free software for working with and managing nucleotide sequences in multiple formats. Many features including sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
Sight: Extendable parallel system for automatic genome analysis - Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Has features for converting between naming systems, sequence retrieval, E-PCR, gene prediction, similarity search, protein pattern search, report formatting etc. Written in Java.
Genalysis Genome Analysis Toolkit - Commercial tool for comparing whole genomes or large genetic sequences. Outputs lists of matches and dot-plots and supports web-based BLAST searches.
EMBOSS - The European Molecular Biology Open Software Suite. An open source project started by the EMBnet community in order to replace proprieatry systems like GCG.
GeneRunner for Windows - A fairly old sequence analysis tool for everyday lab use. Formerly a commercial product - now "abandonware."
DNA-Star - Lasergene - Commercial sequence analysis and manipulation suite for Windows and Macintosh.
DARWIN - An interactive tool for peptide and nucleotide sequence analysis
VectorNTI - Commercial software suite for analysis and manipulation of DNA and protein sequences
slcview - slcview is an open source program which allows automated generation of high quality clustergrams and tree images from .cdt files.
PHRED - Base-Calling Software with Quality Information - A widely-used program for calling DNA sequence bases from sequencer trace files.
BioAfrica - genetic data environment (GDE) for Linux download - An integrated linux environment for bioinformatics and evolutionary analysis based on the Genetic Data Environment (GDE)
GeneticXchange - Software for life science discovery; enterprise-level data integration and desktop biologists.
Array Genetics - Bioinformatics programs, including MendelBase.
AcaClone pDRAW32 - Freeware DNA cloning, analysis and visualization software.
Verbumculus Genetic Sequence Analyzer - An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Executable for Sparc-Solaris, Sparc-Intel or Linux-Intel. Also available as a Java applet.
Bioperl.org - The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
BioJava.org - The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
BioPython.org - The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
AceDB - A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.
BioLisp.org - BioLisp.org is a public resource supporting scientists who use Lisp to develop intelligent applications in the biological sciences. We collect and disseminate Lisp biocomputing code, and gather pointers to Lisp and other Intelligent BioComputing methods.
Bielefeld University Bioinformatics Server - BiBiServ supports Internet-based collaborative research, software development and distance education in bioinformatics.
The Sanger Centre : Informatics Software: Dynamite - Code generator for writing dynamic programming programs.
AcePerl - OO Interface to AceDB
Boulder.pm - Simple but powerful data exchange language, suitable for serializing biological data objects.
AlgoNomics - Provides online, as well as on-site, tools for protein sequence analysis and structure prediction. Focused on the relationship between the amino acid sequence of proteins and their function.
Life Science Informatics Solutions - InforMax's solutions combine molecular biology techniques, information technology and Internet communications to automate the research process, facilitating high-speed analysis and dramatically increasing productivity.
Array Genetics, Inc. - Provider of software solutions to meet the needs of researchers seeking to extract information from genome sequencing projects and DNA microarray screening. Free access to SeqIt, an on-line protein database mining program.
Industry Support Programme - Helping industry adapt quickly to, and maximise benefits from, developments in the fast-growing fields of bioinformatics, computational biology, and information technology in general - from the European Bioinformatics Inst.
Genomica Corporation - BioPharmaceutical software for functional genomics, gene discovery, and positional cloning; using genetic analysis, physical mapping, and sequence analysis.
Genetics Computer Group - GCG is a bioinformatics company specializing in DNA and protein analysis software, the Wisconsin Package, used by scientists worldwide.
Paracel, Inc. - Genetic data and text analysis tools for the biotechnology, pharmaceutical and government markets.
Silicon Genetics - Bioinformatics tools for visualization and analysis of gene expression data, allowing scientists to extract knowledge for drug discovery and gene function identification.
Structural Bioinformatics, Inc. - Expediting lead discovery by providing structural data and analysis for drug targets.
InnaPhase Corporation Web Site - InnaPhase provides innovative desktop and enterprise technology solutions for early drug development teams.
Biodatabases - Molecular database technologies. To-Oracle database conversions. Data-mining and eCommerce development for genomics and proteomics.
Tripos, Inc. - Provider of discovery research software & services to pharmaceutical, biotechnology, & other life sciences companies worldwide.
LucID Professional - Software for creating interactive keys for biology, taxonomy, medicine and agriculture. Free trial available.
Matrix Science - Mascot, the on-line search engine for protein identification using mass spectrometry data
LabBook - Provides XML-powered Internet solutions and bioinformatics applications for the life science researcher to access, data mine, integrate, store, and visualize biomedical information.
CuraGen Corp. - GeneScape Portal promoting CuraTools, an integrated suite of bioinformatics tools for easy analyses on collections of sequences.
Rosetta Inpharmatics - Informational genomics - the integration of bioinformatics with genomics tools to accelerate and improve the drug discovery process. Providing an economical, reliable, and flexible technology for pharmaceutical, biotechnology and agricultural companies.
AMITA Databases - Front-line and back-end bio-database development services for bioinformatics projects: design and maintenance of public sequence repositories, commercial data mining applications of molecular biology databases, automated data mirroring, database conversion.
bio informatics - genome databases and tools - Gene Biotechnologies, a company offering human, mouse and drosophila genome databases, a View&Search program and advanced products in development. Provides services including converting custom databases and adding special features.
MiraiBio Inc - Hitachi Genetic Systems, by MiraiBio Inc, offers quality instruments, software, consumables and supporting applications for the genetics/molecular biology laboratory.
eBioinformatics BioNavigator - eBioinformatics offers BioNavigator a web-based service incorporating tools and databases from many sources; enabling you to perform sequence analysis, database searching, PCR primer design, and molecular modeling.
Caesar Software, LLC - Offers iOligo software which designs oligonucleotides for PCR or sequencing reactions, and orders them directly from synthesis companies.
Informatics - Providing integrated information management solutions for the life sciences.
ePitope Informatics - Prediction and analysis of protein epitopes - Internet-based, applied bioinformatics company specialising in the prediction and analysis of protein B cell epitopes. Serving scientists working in areas that include diagnostics, therapeutics, life science research, and antibody production in general.
Compugen - Develops and markets platforms, tools and products that accelerate post-genomic research, the advanced study of proteins and protein pathways, and drug target discovery.
LabDB.com - Do fast track experiments online for gene analysis, homology analysis for fingerprinting, agarose gel image comparison applications
Biosentients Bioinformatics Software - The Intelligent Molecular Object (IMO) Platform adds speed and efficiency to global data access and integrated analysis. Also: applications integration, automated new applications assembly, ISO9000/FDA/CDER/CFIR validation, distributed computing.
Premier Biosoft International - Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, draw restriction plasmid maps, Gateway cloning experiments, protein interaction network and functional genomics.
DECODON - software tools for functional genomics - makers of Delta2D, software for difference analysis of 2D electrophoresis gels.
Applied Biosystems - Develops and markets instrument-based systems, reagents, software, and contract related services to the life science industry and research community. Portfolio of technologies, includes DNA sequencing, PCR, organic synthesis, chemiluminescence, mass spectrometry, and information management systems.
Viaken Systems - Providing scalable and secure bioinformatics infrastructure, using customer defined software.
Informagen - Produces DNA secondary structure prediction software including alignments and Chous-Fasman analysis.
CELLECTIS : Rational Genome Engineering - A company developing targeted gene replacement and modification technology.
MDL Information Systems - Discovery informatics company for life sciences and chemistry. Makers of Assay Explorer software to track and datamine imaging based experiments.
AnVil Informatics - Provides professional data mining and visualization services in bioinformatics.
Inpharmatica - Developers of the Biopendium, a resource of protein structure and function information that enables identification of distantly related proteins and thus exploration of the human proteome.
Genaissance Pharmaceuticals, Inc. - Applies genomics and informatics technologies to improve drug development, pharmaceutical marketing and prescription medication.
LabVantage Solutions - LabVantage Solutions is a global provider of workflow driven automation tools, knowledge management software, implementation services, and consulting to leading discovery-oriented, high throughput screening, genomics, proteomics, pharmaceuticals, and combinatorial chemistry companies.
BioTools Incorporated - Provides software tools to accelerate the research process: GeneTool for DNA sequence analysis, PepTool for protein sequence analysis, and ChromaTool for DNA sequence assembly.
DxS Genotyping - DxS provide pharmacogenomic services to the healthcare industry, including research, clinical and diagnostic genotyping. Our SNP testing is performed using Scorpions technology.
GenOdyssee SA - Provides to the pharmaceutical, diagnostic and biotech industry full range of post-genomic services : HT SNP discovery and genotyping, and functional proteomics.
Discovery Partners International - Discovery Partners International is the premier provider of technology, products and services that augment the drug discovery efforts of the pharmaceutical industry.
Proteomes - Human animal proteome research, consulting and database. Searching for the proteome of birth, growth, aging and disease using proteomics tools, 2D and mass spectrometry. Bilingual but some English pages include Korean text.
Glycominds - Company focusing on "more efficient and accurate bioinformatic analysis of complex carbohydrates and their interactions".
BioRAM Informatics - Consulting services in bioinformatics to academic and commercial communities without on-site bioinformatics support.
Hyseq - Pioneer in Sequencing by Hybridization (SBH). Offers tools on gene discovery, polymorphism discovery and SBH.
3rd Millennium, Inc. - Our bioinformatics consulting, systems development, and integration services help ensure your bioinformatics systems are fully geared toward your success and unique strategies. We focus on deploying the best technologies for today while working on the best technologies for tomorrow.
ALCARA BioSciences - Microfluidics arrays ("lab-on-a-chip") for high-throughput pharmaceutical drug screening, multiplexed gene expression analysis, and multiplexed SNP genotyping.
BioCarta - Web-based resource of information on gene function, proteomic pathways, and reagent exchange. Forum for information exchange and collaboration between researchers.
MathSoft Inc. - (now Insightful) is developer of S-PLUS, excellent statistical data mining software. Insightful provides many other data analysis tools.
Ocimum Biosolutions Ltd. - Ocimum Biosolutions is an integrated R&D bioinformatic solutions provider with operations in both the USA and India. The company primarily focuses on the development of key ready-to-use bioinformatics software modules and training. The Indian arm, Ocimum BioSolutions Ltd., located in Hyderabad, is part of the Saraca Group.
Incellico: Analytic Software for the Life Sciences - provides genomic data integration toolkits and web-based gene expression analysis software for microarrays and other applications, using Java-based platforms for genetics research, bioinformatics, and drug discovery
Stratagem Corporation - StrataGem Corporation provides complete open source enterprise solutions. From AD/DA data acquisition to process automation, workstations to network server solutions, open source software migration to custom software design, planning to installation and training, StrataGem can provide the answers to your open source technology needs.
Cambridge Antibody Technology - Company developing human monoclonal antibodies as novel therapeutics. Also applying its technology platform to functional genomics to assist the discovery of new drug targets.
GeneData - Provides customizable software solutions and related scientific services for the analysis of genomics and proteomics data.
Prokaria - A biotechnology company that is combining ecology and bioinformatics to directly discover novel genes in nature. Currently focussing on thermophiles.
SomaLogic - SomaLogic is building the tools for post-genomic life sciences.
BioInformatics, Inc. - Provides market research to clients in the biotechnology, medical, and pharmaceutical industry.
Evologic, bioinformatics, microbial genetics, organic chemistry and automation of continuous culture - EVOLOGIC SA combines the most recent scientific advances in bioinformatics, microbial genetics, organic chemistry and automation of continuous cultures
Corimbia Inc. - Corimbia provides software products and consulting services for processing and analysis of gene expression data. Corimbia's tools incorporate "statistical intelligence" throughout the process which they claim enhances the quality of the results and reduces error.
Metalife AD - Software company providing integrated molecular database technologies for life science research. NB: control to see site in English is at lower right
Myriad Biotechnology Tool: ProNet - Myriad's ProNet program is designed to rapidly identify large numbers of novel protein-protein interactions.
Bioinformatics Solutions Inc. - Professional algorithmic and software solutions for the bioinformatics industry: PROSPECT for protein structure prediction, PatternHunter for identifying all approximate repeats in a complete genome, and COPIA for discovering motifs in a family of protein sequences.
INCOGEN, Inc. - The Institute for Computational Genomics (INCOGEN) focuses on computational and data management solutions to the complex challenges faced by researchers in plant and animal genomics.
Labstream - A bioinformatics company specializing in genetic and proteomic visualization and analysis.
Oxford GlycoSciences - OGS is a company in the field of proteomics-based drug discovery and development. OGS has developed and integrated a series of proprietary technologies for the identification of proteins directly associated with a particular disease, creating a platform for drug discovery.
e-Proteomics.net - Offers microarray products to further dermatology research. Webpage has information on techniques used to analyze proteins.
TIB MOLBIOL - DNA primer and probe synthesis and diagnostic PCR assay design.
Ready Vector - Offers MIDGE and other innovative DNA expression vectors for molecular biology, gene therapy and genetic vaccination. Product properties are discussed.
Rosetta Inpharmatics, Inc - Provide software solutions designed to accelerate life science research using advanced genomic data analysis technology. Includes product data, publications, and job opportunities .
DNA sequencing service - A DNA sequencing and microsatellite analysis service
Metabolic Explorer - Explores and designs metabolic pathways.
Molecular Mining Corporation - Genomics, proteomics, combinatorial chemistry, computational science and machine learning for drug discovery.
Bioinformatics Solutions Inc. - Tools for distant homology search, protein folding, phylogeny, motif finding, alignment, proteomics database and mining
VizXlabs - Develops software systems for the acquisition, management and analysis of molecular biology data and information.
ProteomicsSURF - A Pointer to Proteomics Research Resources! ProteomicsSURF, a meta directory, is dedicated to provide web information on proteomics methods & protocols for both novice and advanced users by pointing appropriate 'directories' that list relevant and useful resources.
TimeLogic Corporation - With our DeCypher Bioinformatics Accelerator, TimeLogic speeds genomic discovery for biotechnology and pharmaceutical companies. DeCypher dramatically accelerates computationally intensive algorithms, including BLAST, Smith-Waterman and HMM analysis.
geneticXchange - geneticXchange provides the only open system Data Integration Platform to help accelerate the drug discovery process for biotech and pharmaceutical companies.
MetaHelix Life Sciences - Metahelix Life Sciences is a company that specializes in scientific consulting, contract research, application software and product development in the emerging areas of life science informatics and genomics.
Gene-IT - High Performance Bioinformatics Software for Sequence Data Mining - Gene-IT is a bioinformatics company that provides life-science research organizations with scalable high performance software and scientific expertise for biological sequence data mining.
Iobion Informatics LLC--providing bioinformatics software - Iobion Informatics is a bioinformatics software company specializing in software for the analysis of microarray data. GeneTraffic software offers tools for analysis of two-color microarrays and is the first of Iobions many planned product releases.
BioDiscovery, Inc. - Offers microarray bioinformatics software and services.
Syngene - Gel Documentation and Analysis Systems for Bio-Imaging Informatics - Syngene, market leading providers of bio imaging systems, gel documentation systems and gel analysis software for uv, white light, chemiluminescence, fluorescence applications. Our key products; GeneGnome, GeneGenius, GeneTools and ChemiGenius empower the user with sophisticated hardware and software driven by a simple easily understood interface.
Genomatica, Inc. - Home of the Genetic Circuits Simulation System - A leading innovator of in silico systems biology, building proprietary cellular-level models to accelerate the identification & production of more effective drugs, chemical & agricultural products, & enabling in-silico biological discovery.
DNA Software, Inc. - Provides consulting on nucleic acid thermodynamics and OMP, the Oligonucleotide Modeling Platform, a software framework for building applications to design multiplex PCR primers, probes and DNA microarrays.
United Bioinformatica Inc. - UBI distributes InforMax Inc.'s Vector NTI products in Canada. Simple, elegant solutions to your bioinformatics' needs.
Geospiza, Inc. - Geospiza's bioinformatics software helps service, research, and clinical laboratories manage and analyze data from genomics, DNA sequencing, genotyping and proteomics.
Genamics - Supplier of DNA and protein sequence analysis software.
Aneda Limited - Aneda, formerly Edinburgh Biocomputing Systems, develops software tools for researchers involved in genomics and proteomics, including the MPSRCH (tm) suite of Smith-Waterman programs which run on general purpose hardware.
LION Bioscience AG - Biological information technology company providing integrated solutions for genomics and bioinformatics to the life science industry.
Accelrys - Supplier of bioinformatics software for gene and protein sequence analysis. Also supply High-Throughput Screening systems and enterprise databases for managing bioassay information. Formerly Oxford Molecular.
Hippron Physiomics - Develops web-based software for the visualization and analysis of biological signaling pathways.
Jiwah LLC - Bioinformatics consulting firm experienced in Perl, C, SQL, Java, Apache, Internet skills and domain knowledge in bioinformatics. Data visualization, DNA computational algorithms, data mining, network programming, data tracking and management, LIMS design and implementation, data modeling, and information processing.
The Biotechnology Center, UIUC - BTC provides cutting-edge genomics research services for academic and commercial research projects
PGX Pharmacogenomics Solutions - The science of using genetic information from an individual or population to predict the safety, toxicity and/or efficacy of a drug is termed pharmacogenomics, also known as PGx. PGx, a leader in pharmacogenomics, offers pharmacogenomic clinical and research services as well as bioinformatics services.
StrataGem Corporation - StrataGem Corporation provides complete Open Source migration services. Open Source networks, single and multi-user desktop support, enterprize administration, training, design, and coding services to all size organizations.
InfoPro Solutions - InfoPro Solutions Inc., based in California, specializes in information technology services focusing on the development of enterprise-class, mission critical systems for pharmaceutical and biotechnology industries including clinical trial software.
Expression Analysis - Expression Analysis, Inc. (EA) provides high quality processing and data analysis services using the Affymetrix® GeneChip microarray technology.
Life Sciences Consulting - Tribiosys is a professional services company providing life sciences solutions to the bio pharmaceutical industry.
Amplicon Express & Genome Express - DNA Sequencing Services, Custom BAC Library Construction, Bioinformatic Services, cDNA Library Construction and Functional Genomics Services
geneKRAFT bioinformatics - geneKRAFT is a biotech outsourcing company specializing in genomics and bioinformatics services.
Biomax Informatics AG - Biomax Informatics AG (Martinsried, Germany) is a leader in the development of customized bioinformatics solutions.
Mascon Life Sciences - Bioinformatics solutions to optimize drug discovery related research efforts through smarter data integration, intelligent data mining and innovative analysis approaches.
ITC Software - Scientific Software Development - ITC Software provides data integration solutions to individual researchers, biotechnology and pharmaceutical companies and academic and government funded research institutions
Integrative BioInformatics - Integrative BioInformatics is a biotech consulting firm with expertise in computational biology. It specializes in bringing its software solutions to bear on complex biological and data analysis problems.
Northwoods DNA - Specializes in high quality DNA sequencing and genotyping.
Genomix Corporation - Genomix Corporation delivers state of the art computational biology methods and data systems to accelerate every step of the drug discovery and development processes.
Welcome to the Cellular Genomics Website - Cellular Genomics, Inc. - Setting New Standards for Genomics-Based Drug Discovery.
Libraria - Building Drugs from Knowledge - Libraria's initial focus is on Kinases, with future expansion planned into Proteases, GPCRs, and other gene family targets. Libraria's technology platform is target and structure independent.
Structural Genetics - Specializes in proteomics and computational drug discovery designing drug leads using docking and ligand design. Accepts contract projects for lead drug discovery and development of software and databases in proteomics.
Axaron Bioscience AG - A functional genomics company that has emerged from the joint venture BASF-LYNX Bioscience AG. Axaron integrates scientific expertise and technological know-how in the field of functional genomics to provide solutions that increase the quality of life.
Elitra Pharmaceuticals Inc - Antimicrobial drug discovery company that focuses on functional genomics, high throughput screening and gene-to-lead technologies.
Functional Genetics, Inc. - Functional Genetics is applying gene-inactivation technologies and robust screening methods to discover and validate genes and to develop gene-based pharmaceuticals for human diseases.
Genset - The science of medicine - Genset is a fully integrated genomics company engaged in providing tailored genomics information to the drug industry through focused strategic partnerships. The Company's mission is to assist pharmaceutical companies in the discovery, development and marketing of their drugs through the discovery of common disease and drug response genes.
Penn Bioinformatics Software - Bioinformatics Software For Licensing
Custom Biochip and Biosensor Fabriaction - Thin film processing services for complex thin film biochip and biosensor design and fabrication.
Coventor, Inc. - Software and consulting for biotechnology and microfluidics enabled products.
Asper Biotech - Offers genotyping equipment and service, resequencing, chip development and coated microarray slides.
Clondiag - Clondiag is a high tech company engaged with development and production of miniaturized systems for measuring macromolecular interactions and assaying diagnostic parameters
DigitalGene Biosciences - Produces molecular biology instruments such as microarrayers and thermocyclers for genomics, proteomics applications include peptide synthesis, protein ID and protein chip development.
Transcription Element Search Software (TESS) - Very helpful software for locating and displaying transcription factor binding sites within DNA sequences - from the Univ. of Penn.
BioMolecular Engineering Research Center - Tools and methods for computational biology. Working on secondary protein structure prediction, providing reliable profiles, and developing new ways to study molecular biology through bioinformatics.
Entrez Browser - Retrieves molecular biology data and bibliographic citations from the NCBI's integrated databases.
Geneva Bioinformatics (GeneBio) S.A. - GeneBio provides proteomics software tools and databases including SWISS-PROT, PROSITE, SWISS-2DPAGE and Melanie. We also offer a secure version of ExPASy molecular biology web server.
Transterm - a database of mRNA regions and motifs - Transterm - an interactive database of mRNA regions and motifs from all species and genomes. Users can browse the pre-computed data tables, search the sequence databases or search their own sequences.
INCBI Irish National Centre for BioInformatics - Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) servers, Blast server for parasite genomes (EBI), US (NCBI) servers, Protein structure prediction, PredictProtein Server in Heidelberg, Gene identification, splice sites, exons, introns and a list of gene structure prediction programs
BioGIS: Israel Biodiversity Information System - Israel Biodiversity Information System (BioGIS) is a Geographical Information System established to create a national database of the flora and fauna of Israel. The system is open to the public and provides advanced tools for querying, analyzing, modeling, and visualizing patterns of species distribution.
Melanie II 2-D Analysis Software - Powerful, state-of-the-art, 2-D analysis software package with user-friendly interface from the Swiss Institute of Bioinformatics (SIB).
AG BIODV Software - Links to software developed by the AG BIODV group. Tools for consensus, alignment and definition. Both downloadable and Web-based.
MedMiner - An Internet biomedical data-mining tool for organizing search information gathered from textual or genetic databases - from the NIH National Cancer Inst.
Bionavigator - Provides an integrated set of online tools that allow use of GCG, BLAST and other programs. Also allows data storage. Commercial site with some free services.
Searching GenBank - Text and similarity searching, provided by the National Center for Biotechnology Information (NCBI).
Molecular Bioinformatics of Gene Regulation - The focus of the GBF project "Molecular Bioinformatics of Gene Regulation" are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulatory DNA sequences and protein factors binding to and acting through them.
Sequence Analysis (Bielefeld University Bioinformatics Server) - Collection of sequence analysis tools.
GeneCards: Human Genes, Proteins, and Diseases - Database of concise information about human genes (and their mouse homologs), focusing on their cellular functions and medical aspects - from the Weizmann Inst. of Science.
SUPERFAMILY HMM library for Structural Assignments to protein sequences and Genomes - This server is a Hidden Markov Model library providing 3 services: sequence searching, sequence alignments and genome assignments.
TRANSFAC-The Transcription Factor Database - Very thorough compilation of transcriptional regulatory protein factors & their cognate gene promoter elements along with DNA sequence search & analysis programs - from GBF, Braunschweig, Germany.
Multiple Sequence Alignment - Online services for multiple sequence alignment, including ctree, clustalw and msa. Includes sources to build clustalw on your system.
FTG: Fast Fourier Transform approach for locating protein coding genes - This site provides user a choice of using different Fourier Transform based techniques on their genomic sequences to identify protein coding regions in the genome. This algorithm improves the efficiency of gene prediction and does not require any learning set. (Unfortunately, uses client-side scripting which seems broken in IE 5.5).
genomesapiens.org - presents the HIGH database, a curated annotation of human DNA regions that are proven to code for Immunoglobulin-superfamily proteins.
Protein Structure Prediction Using Web Resources - SPORes is a website for protein structure prediction using the web browser as an interface to software that runs of web servers or other resources available over the world wide web.
Microarray Database Gateway - Tools for managing, accessing, and analyzing cDNA microarray data generated by the NCI Div. of Clinical Sciences µArray Center - from the BioInformatics and Molecular Analysis Section of the NIH Center for Info. Technology.
The XEMBL Project - XEMBL provides access to the EMBL/GenBank/DDBJ Nucleotide Sequence Database, providing output in various XML standards.
NIH BioInformatics and Molecular Analysis Section - Numerous computational tools and resources to unite advances in biology with those in computers, informatics, and networking for the genomic and genetic analysis fields of BioInformatics; division of the Computational Bioscience and Engineering Lab at the Center for Information Technology.
REBASE - The restriction enzyme database, from New England Biolabs.
PIR-International Protein Sequence Database - produces a comprehensive, non-redundant, and expertly annotated protein sequence database. PIR features integrated annotation search to support functional/structural genomics and proteomic research.
Genepop on the Web - Online version of the program for populational genetics.
SA National Bioinformatics Institute - SANBI aims to bring genome information, computational biology, and analytical tools to the South African research community. Hosts SA National EMBNet Node, provides links to Sequence Retrieval System (SRS), GeneKraal, and TB Genomes Analysis Server. Research in Sequence Tag Alignment and Consensus Knowledgebase (STACK). Databases include BLAST search in Mycobacterium genome.
ProPred - This server allows the prediction of promiscuous MHC binding regions in an antigen, which are useful for subunit vaccine design. The 51 HLA DR alleles are used for prediction by the server.
Metalife Database - Offers a searchable database of proteins and other organic materials.
Online Lab Reporting - A service that allows clinical laboratories to send test results to referring physicians over the internet. A help forum and FAQ pages are included.
Molecular Informatics Resource for the Analysis of Gene Expression - Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction from the Institute for Transcriptional Informatics.
Virtual Genome Center - Online computational resources for PCR primer selection, similarity searching- from the Univ. of Minnesota.
GenomeNet WWW server - Very nice collection of bioinformatics tools, including BLAST and MOTIF - from Kyoto Univ.
RNAGENiE - An online program which locates novel RNA genes in genomic DNA.
Center Structural Biology: Programs and Tools - User guides and worked examples for software applications in structural and molecular biology - from Yale Univ.
Matrix Science - Mascot is an on-line search engine for protein identification using mass spectrometry data. Search NCBI nr and dbEST using peptide mass fingerprint data, sequence queries, and MS/MS peak lists.
Webcutter 2.0 - Free, online software for restriction mapping nucleotide sequences-from Yale Univ.
NEBcutter V1.0 - On-line DNA sequence tool to find large, non-overlapping, open reading frames and sites for all restriction enzymes-from New England BioLabs.
Fasta3 - Sequence similarity and homology searching against nucleotide and protein database using the Fasta3 programs.
Biomolecular Interaction Network Database (BIND) - BIND is a database designed to store full descriptions of interactions, molecular complexes and pathways.
PEDANT - Completely automatic and exhaustive analysis of protein sequence sets - from individual sequences to complete genomes
CUBIC: Columbia University Bioinformatics Center - Features PredictProtein service for sequence analysis and protein structure prediction, META for single-page interface to validated sequence analysis, PredictNLS for prediction and analysis of nuclear localization signals, EVA for evaluation of automatic protein structure prediction servers, and DSSPcont for continuous assignment of protein secondary structure.
General Repository for Interaction Datasets (GRID) - The GRID is a database of genetic and physical interactions. It contains interaction data from many sources, including several genome/proteome-wide studies, the MIPS database, and BIND
Molecular Interactions Database (MINT) - MINT is a database designed to store functional interactions between biological molecules (proteins, RNA, DNA).
Database of Interacting Proteins (DIP) - The DIP catalogs experimentally determined interactions between proteins while combining information from a variety of sources to create a single, consistent set of protein-protein interactions.
Scansite - Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.
JustBio: Online Tool Set - A Suite of Online tools for analysis of DNA/RNA, Proteins, and Arrays.
Verbumculus Genetic Sequence Analyzer - An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also available as a downloadable program.
WU-BLAST Archives - Sensitive, selective, and rapid sequence database searching with gapped alignments - from Washington Univ.-St.Louis.
BLAST - NCBI's sequence similarity search tool designed to support analysis of nucleotide and protein databases.
GeneMatcher - Access to Smith-Waterman-based FDF sequence comparison program, with excellent explanation of when to use it vs. BLAST - from the Univ. of Lausanne, FR.
DeCypher II - Smith-Waterman protein and nucleic acid database search program - from TimeLogic Corp.
GeneStream II - Sequence comparision and search programs, including the rigorous Smith-Waterman algorithm (in FastA and Ssearch) - from the IGH, Montpellier FR.
Meta-MEME v2.0.1 - Software toolkit for building and using motif-based hidden Markov models of DNA and proteins - from the Univ. of California-San Diego.
The ISREC Group Servers - Detection and assessment of similarity between distantly related sequences by means of a variety of remotely-executable software - from the Swiss Inst. for Experimental Cancer Research.
HMM library for all proteins of known structure - This is a server for structural superfamily assignments to protein sequences using Hidden Markov Models. The services included are: -homology searching -alignments -genome assignments
Rat Genome Database - Contains rat genomic data such as genes, SSLPs, ESTs, QTLs, and strain information and tools such as vcmap, genome scanner, rhmap server, metagene. Also has a rat research community forum.
Ensembl Genome Server - Ensembl is a joint project between EMBL-EBI and the Sanger Centre to develop a distributed software system which produces and maintains automatic annotation on eukaryotic genomes.
Mouse Genome Informatics - This site contains information on mouse genetic markers, mapping, phenotypes, mammalian homology and gene expression. All data are searchable through a set of Query Forms.
GenomeSeek - A fully-searchable database to provide information and easy access to over 200 current and completed genome projects.
Human Genome Sequencing Center - Provides direct access to the data computed on several organisms such as Rat, Mouse, Drosophila, and Bovine as it relates to human genome sequencing.
SWISS-PROT + TrEMBL - The SWISS-PROT database contains high-quality annotation, is non-redundant and cross-referenced to many other databases. SWISS-PROT is accompanied by TrEMBL, a computer-annotated supplement, which contains the translations of all coding sequences (CDS) present in the EMBL Nucleotide Sequence Database, which are not yet integrated into SWISS-PROT.
Quaternary Structure Prediction - This is an experimental bioinformatics server. Classifies protein sequences as homodimers or non-homodimers. Applications: metabolic reconstruction, protein structure and function assignment, drug-design, etc.
Swiss-Pdb Viewer - User-friendly interface allowing analysis of several proteins at once, including superimposition to deduce structural alignments, compare active sites, etc. From GlaxoWellcome Experimental Research, Geneva, Switzerland.
Proteomics Analysis: Z3 and LabOnWeb's Z3OnWeb - Proteomic analysis for analyzing 2D-Gel images. Use Compugen's Z3 or Z3OnWeb utitlities for automatic spot detection and registration ( alignment) of protein gel images to match the spots.
Swiss-Model - Automated comparative protein modelling server to make protein modelling accessible to biochemists and molecular biologists worldwide - from GlaxoWellcome Experimental Research, Geneva, Switzerland.
The Protein Information Resource - In collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japanese International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence Database --- a comprehensive, annotated, and non-redundant set of protein sequence databases in which entries are classified into family groups and alignments of each group are available.
InterPro - The Integrated Resource of Protein Domains and Functional Sites. - A database built from Pfam, PRINTS and PROSITE.
Proteomics Tools - Online software for protein analysis from the Swiss Institute of Bioinformatics (SIB).
Combinatorial Extension of Polypeptides - Method for finding 3-D similarities in protein structures from the UCSD Supercomputer Center.
3D-PSSM Fold Recognition Server - The 3D-PSSM server combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.
Virtual Ribosome - Instantly convert your DNA sequence into peptide in three reading frames.
Munich Information Center for Protein Sequences (MIPS) - Bioinformatics research group offering organism specific information (Yeast, Cress) as well as search tools for public databases.
Entelechon Backtranslation tool - Online backtranslation tool for translating a protein sequence into a DNA sequence. The codon usage can be downloaded from a database and adjusted manually for each amino acid, if required. Java applet.
Protonet - Provides automatic hierarchical classification of proteins sequences.
PredictProtein Server - Most widely used server for analysing protein sequences, searching protein databases, and predicting protein structure - from Columbia Univ.
Institute of Molecular Bioscience - The Institute for Molecular Bioscience is the centrepiece of a research complex being developed by the University of Queensland in partnership with Australia's CSIRO and other research agencies. Research focus is on animal, biomedical and pharmaceutical research and it has a major division of genomics and bioinformatics.
Bioinfo.PL - polish bioinformatics site - Site of a Polish group working mainly on protein sequence analysis.
DISCO Research Group - Computational Biology and Natural Computing.
Brutlag Bioinformatics Group - Homepage of a group at Stanford University who are interested in the problems of predicting biological function and structure from primary sequence. Developers of EMOTIF, EMATRIX, and 3MOTIF.
Bioinformatics Unit at University of Manchester - Provides links both to projects and the people involved, comparative dot plots of whole genomes and chromosomal fragments, a browsable ontology of bioinformatics, Comparative interaction tables, 3D visualisation of the yeast protein clusters in the INTERACT database, EMBL-SCALAR, Search at SWISSPROT using Conceptual BLAST.
BioInformatics Centre - Singapore - BIC hosts Bio-Resources including BioAgent, BioPortal, APBioNET, BioJournals, BioFTP Sites, BioSoftware, Biotech Directories, BioNet News/Archives, Bio Databases, Bio Catalogs, E-Mail Servers, Virtual Lib, Web Search, Patent Search
Computational Biosciences Section - Oak Ridge National Laboratory - The mission of this organization is to address fundamental questions in the life sciences and provide information and analytical resources to the wider biology research community.
UCLA Bioinformatics - Main web site for the UCLA Bioinformatics program.
Gary Churchill's Statistical Genetics Group - A group at Jackson Laboratories who are developing statistical and computational tools for investigations of genetics and molecular biology. They are studying how natural genetic variation determines phenotypic variation in higher organisms. Major interests seem to be QTL analysis and analysis of expression array results.
Computational and BioInformatic Research at WSU - Current research projects include: Predicting disordered regions within proteins from amino acid sequence, Estimation of protein disorder within genomic data, and investigation of the assembly/insertion process of fd Phage.
Bioinformatics Centre, IMTECH, Chandigarh, India - A bioinformatics research centre with interests such as protein structure prediction and biocomputing. Provides useful software including some they have developed.
Division of Genetic Medicine, Vanderbilt University Medical Center - Homepage of Division of Genetic Medicine. Describes bioinformatic techniques being used, current research projects and faculty, current job openings.
AG BIODV: Software Development for Molecular Biology - AG BIODV is a research group at the GSF National Research Center for Environment and Health. We develop software tools for sequence and promoter analysis.
Linnaeus Centre for Bioinformatics - Linnaeus Centre for Bioinformatics, Uppsala, Sweden, research areas include Algorithms and Databases, Genome Studies, Expression and Function, and Structure and Design. Runs courses and seminars in Bioinformatics.
Virtual Institute of Bioinformatics in Eire - The Virtual Institute of Bioinformatics in Eire (VIBE) is an initiative to consolidate bioinformatics research in the Republic of Ireland.
Biomolecular Modelling at the Imperial Cancer Research Fund - Group headed by Dr. Michael Sternberg working on protein bioinformatics tools for fold recognition, modelling, docking, and genome annotation. Developers of 3D-PSSM, 3D-JIGSAW, SAWTED, FTDOCK.
Modlab - The Molecular Design Laboratory of the University of Freiburg - Germany - Modlab is a virtual research group at the biological faculty of the University of Freiburg. Its main aim is to complement the biology, chemistry and computer science curricula by teaching and research in bioinformatics and molecular design, and to provide the Gecco!(TM) prediction server.
Centre for Molecular and Biomolecular Informatics - The Centre for Molecular and Biomolecular Informatics is the national center for in silico molecular sciences.
Lawrence H. Baker Center for Bioinformatics and Biological Statistics - Bioinformatics faculty, research, training, and resources at Iowa State University.
Hanah Margalit's Bioinformatics Lab - An Israeli lab focussing on: determination of T-cell epitopes along a protein sequence, protein-DNA interaction in transcription regulation, genome-scale analysis, sequence-structure relationship.
Theoretical and computational biology group - The Theoretical and computational biology group at the MRC Laboratory of Molecular Biology in Cambridge is headed by Cyrus Chothia. The group has a strong interest in genome analysis and protein structure.
Artificial Intelligence Research Laboratory at Iowa State University - Development of data-driven knowledge acquisition in computational molecular biology from diverse, distributed, biological data sets with applications in genetic network inference and macromolecular structure-function characterization.
Computational Molecular Biology Training Group - Integrative graduate education and research training (IGERT) Computational Molecular Biology at Iowa State University. Major thrusts include bioinformatics, genomics, genome evolution, and macromolecular Structure and function studies.
Helix Bioinformatics Group - This is a research group within the Stanford Medical Informatics laboratory directed by Russ Altman, MD, PhD. We focus on the application of computational techniques to problems in molecular biology. We are particularly interested in (1) knowledge-based systems for supporting scientific computation (2) the representation and manipulation of structural uncertainty, (3) and the development of novel representations of structure that are useful for computing.
NDSU Plant Abiotic Stress, Genomics and Bioinformatics Group - Homepage of a group at North Dakota State University.
UC Santa Cruz Bioinformatics Research Group - The University of California, Santa Cruz Bioinformatics group built the tools Genie for gene-finding and SAM for hidden Markov models. Interests include assembling the human genome, protein structure prediction, stochastic context-free grammars for RNA alignment.
Dr. G P S Raghava - Work in bioinformatics with particular emphasis on protein structure prediction.
Computational Biology Research Center - Computational Biology Research Center at the National Institute of Advanced Industrial Science and Technology. The focus is on bioinformatics in terms of information theory independent from experimental-biology projects.
BioInformatics Institute of Singapore - An independent organization affiliated to the National University of Singapore; Focus on research and teaching in bioinformatics.
Structural Bioinformatics Lab at Boston University - The homepage for the Structural Bioinformatics Lab at Boston University under Dr. Sandor Vajda.
Bioinformatics and Evolutionary Genomics, Ghent University - Group in the Department of Plant Systems Biology, University of Ghent, Belgium. Working on functional, structural, and comparative genomics.
Support Vector Machines - Book - Complete, simple and rigorous introduction to Support Vector Machines, learning algorithm widely used in data mining, machine vision, bioinformatics.
Bioinformatics: Sequence and Genome Analysis, by David Mount - Companion website to the book with additional material and links.
Bioinformatics - Bioinformatics aims to publish high quality, peer-reviewed, original scientific papers and excellent review articles in the fields of computational molecular biology, biological databases and genome bioinformatics.
Online Journal of Bioinformatics - Electronic publication of bioinformatics, genetic analysis, programming, database mining, and interfacing genetic data.
Journal of Biomedical Informatics - This journal (formerly Computers and Biomedical Research) has been redesigned to reflect a commitment to high-quality original research papers and reviews in the area of biomedical informatics.
Computers and Biomedical Research - This journal provides researchers with up-to-date information concerning the use of computers in biomedicine.
Briefings in BioInformatics - Publishes introductory reviews for the users of databases and analytical tools of contemporary genetics and molecular biology.
BMC Bioinformatics - BMC Bioinformatics (ISSN 1471-2105) is a fully peer reviewed online journal publishing research articles with open access for all. BMC Bioinformatics covers all aspects of computational methods used in the analysis and annotation of sequences and structures, as well as all other areas of computational biology.
Bio Informatics Technology and Systems - Industry journal that explores the impact of new technologies in the life science discovery, research, and development.
DNA Sequence - Publishes mapping data useful to future DNA sequencing, data in full, new procedures, and allied techniques.
Mutation Research/Mutation Research Genomics - Covers the nature and consequences of genome variations in humans and appropriate model systems, focusing on experimental approaches, instrumentation, and informatics technologies.
BioPlanet - Bioinformatics Jobs - Specializes in bioinformatics jobs and employment with job postings, discussion groups, resumes and career resources.
The Canadian Bioinformatics Job Postings Board - Postings for academic, government and industry Bioinformatics-related positions in Canadian institutions.
Systolic Accelerator for Molecular Biological Applications (SAMBA) - Processor array for speeding comparison of biological sequences using a parameterized version of the rigorous Smith-Waterman algorithm - from the IRISA, Rennes FR.
Bioinformatics Law Resources - A comprehensive set of links and other resources on bioinformatics legal issues, biotechnology law and general bioinformatics information.
Bioinform - Bioinformatics news service.
The Bioinformatics Resource - Organizing biennial "Genes, Proteins and Computers Conference" and regular scientific meetings, and providing an on-line research newsletter and other resources for the Bioinformatics Community - by MRC Human Genome Mapping Project Resource Centre.
Bioinformatik - Categorical web directory for bioinformatics theory - from the Univ. of Düsseldorf. Mathematics and Computer-based.
Bioinformatics and Computational Biology Resources - Links to bioinformatics centers and institutions, computational biology guides and documentation, software, academic programs, and meetings from the UCSD Supercomputer Center.
The CMS-SDSC Molecular Biology Resource - Excellent compendium of Internet-accessible analytical tools and resources for Molecular Biology, Biotechnology, Molecular Evolution, Biochemistry, and Biomolecular Modeling from the UCSD Supercomputer Center.
The Institite for Genomic Research - The Institute for Genomic Research (TIGR) is a not-for-profit research institute carrying out structural, functional and comparative analysis of genomes and gene products.
snowdeal.org > {bio,medical}informatics - A weblog that provides daily updates and links to news items and stories of interest to bioinformatics community.
Bioinformatics Resource Centre - Provides registered users access to a comprehensive range of programs and databases to aid genomic and proteomic research, including training and help desk - from the MRC Human Genome Mapping Project (UK). Registration necessary.
European Bioinformatics Institute - Portal for research and services in bioinformatics, with databases of nucleic acid and protein sequences, and macromolecular structures - from the EMBL, Hinxton UK.
Bioplanet Jobs - Bioinformatics jobs, education resources, bulletin board, CV posting.
Bioinformatics in India - Portal for Bioinformatics professionals of indian origin. Contains links to online tutorials, articles and books on bioinformatics.
The National Center for Biotechnology Information - National Library of Medicine / National Institutes of Health. Offers many important databases (PubMed, GenBank,OMIM ...) and some tools
Human Genome Sequencing Center Search Launcher - On-going project to organize molecular biology-related search and analysis services available online by function, providing a single point-of-entry for related searches - from Baylor College of Medicine.
Links to the Genetic World: Informatics - Human genome project compiled links in Bioinformatics
DNA and Protein Analysis Toolkit - Compendium of bioinformatics computing services from The Rockefeller University. Many different ways to analyse biomolecules.
BioExchange - Portal for biotechnology and the life sciences: community, tools, information, industry news and e-commerce.
Genome Programs - Links to online genomics resources - including the individual projects.
MolBiol.Net - Portal for the latest online molecular biology and bioinformatics tools available on the net, ideal for sequence search and analysis without the need to buy expensive locally-installed software.
Bioinformatics Online - Resource for students and scientists who want to understand methods of sequence and structure analysis. Complementary site for the book "Bioinformatics: Sequence and Genome Analysis"
Bioinformatics - Large portal of links to online sequence manipulation and analysis software
Bioinformatics.ca - Web directory of bioinformatics resources
Dictyostelium discoideum genome annotation and analysis portal - A comprehensive Dictyostelium discoideum genome annotation and analysis portaal.
Canadian Bioinformatics Resource - Dedicated to providing researchers with convenient, effective access to high-quality bioinformatics tools and databases.
ColorBasePair.com: on-line bioinformatics resources - Portal of online bioinformatics resources including news, events, job and resume posting, discussion, and links
Molecular Biology Computation Resources (MBCR) - Includes the MBCR Guide to Computer Aided Sequence Analysis, homology searching, databases, and lists of useful links for molecular biologists - Baylor College of Medicine.
BioDirectory.Net - Biology and Bioinformatics Directory - Biological sciences and bioinformatics directory

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